This is human iPSC- derived brain organoids. Culture done by Chen-Wei Liu (Lee lab). Staining by Yuehua Cui and Lishu Chen. Imaging by Xiaokuang Ma

This is another Visium HD analysis of mouse brain sections

This is a Visium HD analysis on microdissected mouse heart SAN, lung and intestine tissue

Single cell and spatial transcriptomics facility at The University of Arizona College of Medicine - Phoenix

This is one example that uses cell segmentation method in spaceranger 4.0. Four pieces of mouse PFC brain tissues are shown.

Another Visium HD dataset

Visium_HD_mouse_visual_cortex control and treated brain sections

This is Zhiyu Dai lab Visium HD data, comparing control to experimental heart spatial gene expression using Visium HD

Our second visium HD experiments, using pooled multiple cortical regions

This is a comparison of our first Visium HD run with 10X sample dataset online

Visium HD experiment for mouse brain sections

This is our first run for the 10X Genomics spatial transcriptomics on Visium HD and also Xenium prebuilt mouse brain panel

This is the first Xenium spatial transcriptomics experiment from Qiu and DAI lab at UA-COM PHX

First Xenium experiment with prebuilt mouse brain gene panel and tissue atlasing panel

This is our first xenium experiment, Qiu and Dai Lab

Integrated four bone marrow samples

human bone marrow treated with erythropoeitin for directed differentiation. Cell type annotation not completed yet.

download anndata file from Tabula Sapiens, apply filtering, subsetting etc.

select a certain cluster and do volcano plot

human bone marrow sample E15 no E treatment

one human bone marrow sample

bulk RNAseq analysis - mouse brain tissue

Another DESeq2 tutorial from counting matrix

DESeq bulk analysis online tutorial

bulk RNAseq analysis from gene counts table. Gene counts table generated using STAR under linux server

This is re-run the Signac vignette - human PBMC10K

This is the second experiment comparing Met transgene controllable expression.

Selected clusters for further analysis of DRG cells

scRNAseq for DRG neurons from control and treated groups

Qiu lab work

Lab projects and techniques

Lab projects and techniques

By LC, for QIU lab

test publishing on RPubs

From an online dataset