olneykimberly
Kimberly
Recently Published
Ecoli vs Saline
4 Ecoli versus 4 Saline pig bulk RNAseq
E2B NeuN negative
Annotation, noise removal, re-cluster, re-annotated
Ecoli pig kidney E1
snRNA annotation
LBD snRNA pilot annotations
beads vs debris
LBD CWOW MDS
Bulk RNAseq MDS
LPS pig blood gene-level star DE
LPS pig blood gene-level star differential expression
LPS pig brain gene-level star DE
LPS pig brain gene-level star differential expression
LPS pig kidney gene-level star DE
LPS pig kidney gene-level star differential expression (DE)
LPS pig tissue comparison and correlation
DEGs shared and unique between tissues.
Correlation in the log2FC among tissues.
LPS mouse brain and pig brain correlation analysis
LPS mouse brain and pig brain correlation analysis. Determine DEGs (adjusted pvalue < 0.05 ) shared and unique between the species. Compute the correlation of the log2FC.
Colonna 15months mice processing
15month mice processing
7_month_colonna_annotation
Colonna 7 month annotation
LBD batches 1-4 processing
Processing script
LBD batches 1-4
Bulk RNAseq LBD vs control for batches 1-4
Colonna 7months mice processing
Processing step for the Colonna 7 month mice dataset
LPS pig tissue log2FC correlation among tissues
DEGs shared and unique between tissues. Correlation of the log2FC of DEGs among tissues.
Pig and mouse comparison and correlation
Comparing DEGs between pig and mouse LPS datasets. Additionally, determining if there is a correlation in the log2FC LPS/saline between the pig and mouse data sets.
Kang mouse re-analysis processing
The reprocessing of the bulk RNAseq mouse brain RPKM data from Kang et al.
Kang mouse re-analysis
Bulk RNAseq mouse brain RPKM data that was re-analyzed through the limma/voom pipeline
Nasonia_Wilson_DifferentialExpression
Nasonia species differential expression