This report documents the execution of the DNA FASTQ to BigWig processing pipeline (DNAfastqBigWig_human_main_v5_31aug2025.sh) which performs comprehensive analysis of paired-end DNA sequencing data from raw FASTQ files to normalized genome coverage tracks.

This Quarto document presents an analysis of the Oswego foodborne outbreak (1940), a classic case in field epidemiology. It includes data exploration, calculation of attack rates, and visualization of the epidemic curve using R. The document demonstrates how epidemiological methods can identify the likely vehicle of a foodborne outbreak and provides a free R script for reproducible analysis. Ideal for students, epidemiologists, and public health practitioners interested in outbreak investigation.