Data visualization

This is a GWAS tutorial with R.

Multi-linear regression (2)

Text mining

Multi-linear regression

Analysis of population genetic structure

Simple regression

Construction of a phylogenetic tree

Correlation

Genomic selection

Lec02

How to use R and visualize data using R

最小コードでQTL解析を実行

本実験では、Rのパッケージagridatに含まれているオオムギの多環境試験データを例として解析を行う。

Apply some regression methods to the blueberry data published by Gibert et al. (2015) https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0138494

バイオメトリックス　第11回講義資料

Minimum codes for GWAS simulation based on the public dataset of rice.

GWAS simulation based on the public dataset of rice.

Select 500 representative accessions based on a genomic relationship matrix. The k-medoids method is used for the selection.

A script for GS simulation with a public rice dataset. You can adjust the parameter settings for the simulation to evaluate their impact on the results of the simulations.

Tutorial for GWAS simulation with a public rice dataset.

GWAS tutorial with a public rice dataset

R scripts to perform GWAS and GS with rice data. GWASとGSを行うためのRスクリプト。イネデータを例として用いている。