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faustovrz

Fausto Rodriguez Zapata

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DocumePSU2022 Leaf x P interaction Anlaysis
Analysis dropping Inv4m x P interaction and adding Leaf x P interaction
Document
PSU2022 INv4m P Leaf Differential gene expression
PSU2022 lipida analysis
gene expression Manhattan plots Inv4m
PSU2022 Growth curves with marginal effects
PSU2022 Phennotypic analysis marginal means
PSU2022 Phosphorus effects
PSU2022 ionome analysis
Growing Degree Days Analysis after spatial correction
Inv4m GxE Analysis: 3 fields
PSU2022 Spatial Correction with GDD Integration
PSU2025 corrected spatial analysys with gddu calculations
GDD for inv4m
GDD calculations fron POWER nasa
BZea Inv4m Flowering time
GxE2025
Document
PSU2025 spatially corrected
Document
PSU2025
Comparing missing data from Bzea 3 datasets
Missing data modelling Bzea
Document
CLY2025 Spatial correction Inv4m
INv4m GxE effects
Spats Spatial Correction
Document
Inv4m Saptial Analysis Model selection
Inv4m internodes
Ancestry call with HMM smoothing
Widesq HMM
BZea WideSeq
Teosinte Introgression Lines Ancestry Analysis by bins
Bzea Ancestry Calls by 1Mb Wideseq
Browser for maizegdb genomes for target sequencing
Ploting introgressions on phylogeny
BUGCOUNT
extract P
Extreact P retention Potential for selected maize accessions.
Extract P Burton
Extracting soil retention potential for maize accessions in root phenotype study
Linearize P
Loading ISRIC Phosphorous Retention Potential Main Clases, and make it a continuous variable
Linearize Phosphorus Retention potential
Load ISRIC. Linearize categorical data
extract_P_burton
Extract P data from root phenotype set, Burton et. al. 2013.
01_extract_P
Extract P data from ISRIC and Oak Ridge models.
soilP
Local adaptation to Phosphorus Availability This package helps in the extraction from geographical coordinates of phosphorus data from two sources, ISRIC for soil retention, and Oakridge National Laboratory for soil availabilty.
Instructivo_Semana_1