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eileenowens

Eileen Owens

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Spring 2025 PTCL Long-read Sequencing VCF Summary
Module Scoring of ALL, CD4 PTCL, and TZL to Single-cell Atlas of Thymus and LN
Correlate PTCL to Monocle 3 Trajectory Analysis
Differential Expression Analysis with DESeq2: Cohort 2 (CanFam3.1)
Structural Variant Analysis
Gene Expression Across Pseudotime
Correlate PTCL to Seurat Single-cell Atlas
Merging T Cell Clusters Part 3 - Module Scoring
Pseudotime Trajectory Analysis
Merging T Cell Clusters Part 5 - GSEA for T-cell markers
Top Marker Expression by Single-cell Cluster - Merged Atlas
Merging T Cell Clusters Part 4: GSEA - Thymus Signatures
Correlate Canine ALLs to Single-cell Atlas of Thymus and LN
Merging T Cell Clusters Part 2: Marker Expression
Merging T Cell Clusters: Part 1 - Integration
Lymph Node Single-Cell Cluster Annotation Part 3: Module Scoring
Lymph Node Single-Cell Cluster Annotation Part 2: GSEA
Lymph Node Single-Cell Cluster Annotation Part I: Expression of Key Markers
Thymus Single-Cell Cluster Annotation Part 3: Module Scoring
Thymus Single-Cell Cluster Annotation Part 2: GSEA and DE Analysis
Thymus Single-Cell Cluster Annotation Part I: Expression of Key Markers
Single-cell Data Normalization and Clustering: Canine Lymph Node
Single-cell Data Normalization and Clustering: Canine Thymus
Differential Expression Analysis with DESeq2 (Cohort 1)
Seurat Sample Integration
DoubletFinder
Seurat QC
Hierarchical Clustering by Mutation Status in CD4+ PTCL
Variant Analysis of RNA-seq Reads from 96 Canine CD4+ PTCLs (Cohort 2)
Variant Analysis with maftools: Cohort 2
Gene Set Enrichment and Variation Analyses of Canine CD4+ PTCL
Clustering Analysis of Canine PTCL Bulk RNA-seq Data