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Intro to R
`R` is a programming language and free software environment for statistical computing and graphics. It's not only a powerful statistical programming language but also the go-to data analysis tool for many computational genomics experts. We will explore how high-dimensional genomics datasets can be analyzed with core R packages and functions.
Finding Patterns with Heatmaps
In this activity, I practiced:
- working in RStudio,
- editing an R Markdown notebook,
- running R code chunks,
- inspecting a dataset,
- converting a data frame to a matrix,
- using the assignment operator `<-`,
- indexing rows and columns,
- making heatmaps,
- scaling data,
- changing color palettes,
- interpreting clusters and correlations,
- and connecting a simple dataset to future cancer biology analyses.