Tutorial for a Simple Predictive Model for Child Maltreatment Risk in R

This analysis performs differential gene expression analysis on RNA-seq data from Crow et al. (2020), examining maize apical tissue samples across multiple experimental factors: Tissue type: V1_Leaf, V1_Root, V3_Leaf, V3_Root, V3_SAM temperature treatment: CTRL (warm) vs cold Genotype: CTRL (B73) vs Inv4m (inverted karyotype) Donor: PT vs Mi21 (treated as batch effect)

Here is an HTML of my worked example. Note that I eliminated all of the recoded variables that I did not use to make the document shorter. If you choose to do that, this is fine.